BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB037F03LP1|AL430411
(885 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig406 755 0.0
3x_Contig1126 614 e-175
>3x_Contig406
Length = 2138
Score = 755 bits (379), Expect = 0.0
Identities = 423/437 (96%), Gaps = 3/437 (0%)
Strand = Plus / Plus
Query: 1 gatcctactctcgccggaaacaaaatagaaacaaatacgaaagactactccagctaaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1702 gatcctactctcgccggaaacaaaatagaaacaaatacgaaagactactccagctaaaaa 1761
Query: 61 atgtgtacatcactatgtacgagtagacaccttttttgtatctttccttcttctccctgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1762 atgtgtacatcactatgtacgagtagacaccttttttgtatctttccttcttctccctgc 1821
Query: 121 tccaatcatactgggaaacat-gatgtgatttttgtacgttttttgttatwagcgataat 179
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct: 1822 tccaatcatactgggaaacatagatgtgatttttgtacgttttttgttataagcgataat 1881
Query: 180 tttcatttcttgattttcgcaggatattggaaccgaatgtatatatatkawtwatatttt 239
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 1882 tttcatttcttgattttcgcaggatattggaaccgaatgtatatataagaaaaatatttt 1941
Query: 240 caacagtgatttcagagttttagaaagtagctaaagacgttttatcaagtttgttcaaga 299
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1942 aaaaagtgatttcagagttttagaaagtagctaaagacgttttatcaagtttgttcaaga 2001
Query: 300 gagtyatacgtttgtttcagagggttttctttcgccgattactttcatttgcgaatatat 359
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 2002 gagtcatacgtttgtttcagagggttttctttcgccgattactttcatttgggaatatat 2061
Query: 360 tcaactgatcaccttatctgtctcagctagcttacagtatccaagt-ggttc-tttttgt 417
|||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 2062 tcaacttatcaccttatctgtctcagctagcttacagtatccaagtgggttcttttttgt 2121
Query: 418 catatattgctaattga 434
|||||||||||||||||
Sbjct: 2122 catatattgctaattga 2138
>3x_Contig1126
Length = 5421
Score = 614 bits (308), Expect = e-175
Identities = 322/326 (98%), Gaps = 1/326 (0%)
Strand = Plus / Plus
Query: 554 atccctatcgaagttgttcggcccagcatccagagcttttgctaccaccaaggttgcagg 613
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 atccctatcga-gttgttcggcccagcatccagagcttttgctaccaccaaggttgcagg 66
Query: 614 tgatcaacaagttgttaagactgctaccaasttggctgaagttyccggtgctgacacttt 673
|||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct: 67 tgatcaacaagttgttaagactgctaccaagttggctgaagttaacggtgctgacacttt 126
Query: 674 gattggtcctggtgccaaagacggtgaagttccaaccgaattggaccaagccactggttt 733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 gattggtcctggtgccaaagacggtgaagttccaaccgaattggaccaagccactggttt 186
Query: 734 agccagattggaattgttgggtaaattggaaggtatcgaagttttcgacaccaagccatt 793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 agccagattggaattgttgggtaaattggaaggtatcgaagttttcgacaccaagccatt 246
Query: 794 ggactcttccagaatcggtaccatggaaaacccaatcattgttgaatcctacgatgacta 853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 ggactcttccagaatcggtaccatggaaaacccaatcattgttgaatcctacgatgacta 306
Query: 854 ccgttatgtcggtgccactggttccc 879
||||||||||||||||||||||||||
Sbjct: 307 ccgttatgtcggtgccactggttccc 332
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.712 1.31
Gapped
Lambda K H
1.38 0.712 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6832
Number of Sequences: 1807
Number of extensions: 6832
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 2
length of query: 885
length of database: 10,358,551
effective HSP length: 16
effective length of query: 869
effective length of database: 10,329,639
effective search space: 8976456291
effective search space used: 8976456291
T: 0
A: 40
X1: 6 (12.0 bits)
X2: 15 (29.9 bits)
S1: 12 (24.4 bits)
S2: 50 (100.1 bits)